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How to change project's configuration data on Hudson machine?

 
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Hey,
I use build.properties file to isolate Tomcat installation home (and other configuration data).
Now, I use Hudson as the CI for my project.
My problem is how to change build.properties of Hudson's checked out source to reflect Tomcat home in Hudson machine?
By editing:
/root/.hudson/jobs/SeamPrototype/workspace/SeamPrototypeTrunk/build.properties
By hand?
Thanks.
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