Hi,
When you download the application through webstart, does it give you a dialog box to confirm that you want to trust the signed application from a third party?
You have to click yes to this to allow the application to be able to do file system stuff on the computer, otherwise it will run with lots of restrictions.
The signing a jar thing was mostly taken care of when I started here. We have an
ant task that does it. Happy to show you that piece of the ant script if you think it will help you.
Cheers, Jared.