As far as I can remember from my preparation from the exam, deprecated methods aren't tested - so you only really need to know about wait(), notify(), notifyAll(), sleep(), yield(), join() and run() as well as the Thread constructors.
Of course, a little bit of extra knowledge about
Java's history can't hurt; besides, it sounds like you've already covered enough about stop() to know what it does and where it might be used (or misused!) anyway.
Please correct me if I'm wrong or if I've missed any required methods out...
Charles Lyons (SCJP 1.4, April 2003; SCJP 5, Dec 2006; SCWCD 1.4b, April 2004)
Author of OCEJWCD Study Companion for Oracle Exam 1Z0-899 (ISBN 0955160340 / Amazon Amazon UK )