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Serial Coms and JSObject

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I am sure it must be me, but I am totally unable to get JSObject to work where I am using serial comms (such as SimplRead).
I assume it has something to do with Javascript security but I cannot see how.
I either get a null.pointer.Exception or a JSException(null).
I can get around the problem but I simply do not understand why it does not work.
Any help appreciated.
Kind regards
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