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Applet freezes browser and client certificate pop up error( JRE 1.5.0_13 , HTTPS)

 
Greenhorn
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I have a Portal Application which has a link that will bring up the Web application within a new browser window.
Web application is configured to use a custom SSO solution for login. All communication with all hosts is over HTTPS.
I have provided in the server.xml of Tomcat the loctaion of the keystoreFile and keystorePass.

When accessing Web application via the portal and the client machine is using 1.5.13 JRE , the import operation (Applet) freezes the browser as it tries to display the file selector dialog and they have a Java client certificate popup appear. The pop up asks to select the certificate to be used with the connection.
When accessing Web application directly in a new browser instance with the client machine using 1.5.13 JRE , import works correctly.
Can anyone help me out in resolving the client certificate pop up.
The interesting issue is that while accessing web application via portal and use JRE 1.4.2_12, things work fine.
Please help me in resolving the issue
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