In WAS you can deploy EJBs without using the console, using the XMLConfig tool... the EJBs you deploy in this way have to be WebSphere-friedly: this means that you have to generate the "deployed EJB-JAR" file from VisualAge for
Java (or using the EJB deployment tool in version 4) and put it in a particular directory.
Look on the IBM site and on
www.redbooks.ibm.com where you can find loads of impressive technical books on WebSphere.
ciao
miki