java and bioinformatics

[Nikos Stavros]

does anyone here have experiance with java and bioinformatics?

[Darrin Cartwright]

Not directly, but you might try this book:
http://www.amazon.com/Java-Bioinformatics-Biomedical-Applications-Harshawardhan/dp/0387372350/sr=1-1/qid=1168037876/ref=sr_1_1/102-6022985-7325710?ie=UTF8&s=books

Good luck!

[Steve Fahlbusch]

You might want to post some of your specific questions, unless of course you are just trying to get some survey or count of the number of users of javaRanch that have experience in java (probably close to 100%) and bioinformatics (who knows, maybe .07%) - or the users that have exprience in bioinformatics in java.

[Nikos Stavros]

So I would like to find out again fi there are any people here that code bio-informatics stuff in Java. Also if you do, do you have website for your research?

[Nicholas Jordan]

bio-informatics is not fully defined yet. A range of definitions include human genome research tools, such as parsers for recognizing patterns in nucleotide seqences, identity-recognition tools, motion detectors used for unattended patients, ....

The list is not well defined at the moment.

[Ulf Dittmer]

The mailing list for the ImageJ Java image manipulation application/library is full of people doing that. ImageJ originates at the NIH, and is used especially in the medical and biological communities.