The implication is that that FTP server is dreadfully insecure when referenced in basic FTP mode in that, subject to the normal *nix file access limitations, it allows a client to roam all over the server but in secure mode it limits access. Besides implementing one of the solutions I proposed in my earlier post
you should also disable the basic FTP mode since it is compromising the security of your server.
You seem to think that there is some action you can take in your client to overcome the access imitations in SFTP mode. If there is there shouldn't be since this would compromise security.