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db2sqljcustomize tool for sqlj

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Currently i have a sqlj project in RAD and WAS8. The project is working absolutely fine and RAD has very good built in support for SQLJ. Now i am moving to STS and WAS. So i want to move my code there. There i am facing two issues

1. How to translate a new sqlj file to .ser and .java
2. How to do customization and binding

I was planning to use db2sqljcustomize tool for that but i am not able to do any progress in this front. Can anybody guide me on what all steps from scratch are required like classpath changes and etc ?

I want to execute the db2sqljcustomize tool from command prompt and then later on through ant file
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