rahshan koll

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since Nov 02, 2017
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Recent posts by rahshan koll

Hello friends,

Thank you for your valuable information.

Hairpin loop in RAB format looks like +X 0 0 0... -X (i.e In between +X and -X there will be at least one zero or the consecutive number of zeros). where X is any number in the given structure but ending number is the negative of the beginning number. Example : +5 0 0 0 -5    or   +2 0 -2     or     +11 0 0 0 0 0 0 0 0 -11.




This is what I did for hairpin loop in my research. But I need suggestions from you that is there any better way to write this program other than this and better explanation for this program? And can you tell me how can I read the .txt file form computer and perform this logic for each structure to find out the number of hairpin loops in each structure in the text file?


Thank you,
Rahshan.





6 years ago
Hello friends,

Do anyone know about the algorithms or built-in library functions in java to find the RNA substructures (ex: hairpin loop, an internal loop, bulge loop)? If anyone knows anything related to this, please let me know.



Thanks,
rahshan.
6 years ago